Movies

Size convergence by the Adder principle.
JT Sauls talks about what he does for qBio and the Jun Lab. See more at the qBio homepage.
Time-lapse video of the construction of Jun Lab (timescale ~1 year).
James Pelletier is a Hertz Fellow :)
Lysis of exponential phase E. coli cells.
Chromosome compression in the micropiston.
Fluorescent E. coli growing in the mother machine. Wang et al, Current Biology, 2010.
How to make the mother machine.
How to make an oxygen plasma cleaner under $500 (we paid about $10K).
How to duplicate the mother machine using epoxy.

Jun Lab - Quantitative And Physical Approach to Biology

Physics and Molecular Biology - Urey Hall 6249-6253, UCSD

The driving force of our lab is the curiosity and desire to understand how and why the biological systems are the way they are. We are often attracted to long-standing questions in biology, for which quantitative, inter- and multi-disciplinary approaches are essential. We value both logic and intuition, but more of "night science" than "day science."

Upcoming

"Single-cell physiology," Sattar Taheri, Steven Brown, John T. Sauls, Dustin McIntosh, Suckjoon Jun, Annual Review of Biophysics (2015). [download]
"Single-cell cultivation in microfluidic devices," Sattar Taheri-Araghi and Suckjoon Jun
[Hydrocarbon and Lipid Microbiology Protocols, Springer (in press, 2015)]

Just Published

"Complete Genome Sequence of Escherichia coli NCM3722," S. D. Brown and S. Jun, Genome Announc (2015) [online]
"Cell-size control and homeostasis in bacteria," S. Taheri-Araghi, S. Bradde, J. T. Sauls, N. S. Hill, P. A. Levin, J. Paulsson, M. Vergassola, and S. Jun, Current Biology (2014) [online] [PDF+extended SI]
[Google Scholar] [news coverage]
"Cell-size maintenance: universal strategy revealed," S. Jun & S. Taheri-Araghi, Trends in Microbiology (2014) [online] [PDF] [Google Scholar]
"Chromosome, cell cycle, and entropy," S. Jun. Biophysical Journal (2015) [online] [PDF]
[from the cover]

Selected Recent Publications


"Bending forces plastically deform growing bacterial cell walls," A. Amir, F. Babaeipour, D. McIntosh, D. R. Nelson, S. Jun, Proc. Nat. Acad. Sci. USA (2014).
Bending forces plastically deform growing bacterial cell walls
"The bacterial chromosome: a physical biologist’s apology. A perspective." Appeared in Small Things Considered [click here] (2014).
The bacterial chromosome: a physical biologist’s apology. A perspective.
[Link to David Goodsell’s new high-resolution E. coli illustration]
"The multi-fork Escherichia coli chromosome is a self-duplicating and self-segregating thermodynamic ring polymer,"
B. Youngren, H. J. Nielsen, S. Jun, and S. Austin, Genes & Development (2014).
The multi-fork Escherichia coli chromosome is a self-duplicating and self-segregating thermodynamic ring polymer
"Physical manipulation of the Escherichia coli chromosome reveals its soft nature," Pelletier & Halvorsen et al., PNAS Plus (2012).
Physical manipulation of the Escherichia coli chromosome reveals its soft nature
"Entropy as the driver of chromosome segregation," S. Jun and A. Wright, Nat. Rev. Microbiol. (2010)
[online] [PDF] [Small Things Considered]
[Google Scholar]
Entropy as the driver of chromosome segregation
"Robust growth of Escherichia coli," Wang et al., Curr. Biol. (2010)
[online] [PDF] [F1000] [Small Things Considered]
[Google Scholar] [The Scientist Top 7 Biology]
[The Scientist Top 7 Biochemistry]
Robust growth of Escherichia coli

News

Many congratulations to Sattar! He will join California State University Northridge in the Fall as an Assistant Professor in Physics. (July, 2015)
We welcome two new postdocs, Jia-Wei from Cornell and Fangwei from Johns-Hopkins. They will start in September. (July, 2015)
Many congratulations to Yonggun Jun! After considering multiple offers, he has decided to join National Central University in Taiwan as a faculty member in biophysics in 2016. We are happy for his new chapter in life and career. (May, 2015)
Benjamin just arrived from École Normale Supérieure (Paris, France) for 6-month internship. (February 20, 2015)
Suckjoon has been selected as a Scialog Fellow for Scialog: Molecules Come to Life by Research Corporation and Gordon & Betty Moore Foundation. (July 16, 2014)
Suckjoon has been awarded a 5-year NSF CAREER Award (MCB, $1.15M) Cell cycle and cell size control in bacteria. (July 22, 2013)
Suckjoon has been named one of the 22 Pew Scholars. [UCSD News] [Press Release] (June 13, 2013)
Our lab alumnus (at Harvard), James Pelletier (now at MIT), has been named a Hertz Fellow. Congratulations! (April 15, 2013)
Thanks to the Paul G. Allen Foundation, Suckjoon is one of the five Allen Distinguished Investigators. [UCSD News] [Seattle Times] [Xconomy] (February 28, 2013)
Thanks to Brendan at UCSD Physics IT, the beta version of our web site is ready for public. (November 13, 2012)
Our lab has officially moved from Harvard to UCSD. The new lab space at UCSD is currently under construction in Urey Hall 6249-6253, to be completed before next year. (October 4, 2012)
James' paper has just appeared online at PNAS. Highlight or full article.(September 14, 2012)
Jean-Yves Bouet (CNRS) visited us.(June 8-12, 2012)
Another brave theoretical physicist, Ariel Amir (Harvard Junior Fellow), will start his adventure in experimental physical biology.(May 2, 2012)
Stuart Austin (NCI) and Henrik Nielsen will be visiting us to discuss bacterial chromosomes.(April 25-28, 2012)
Please visit The Cost of Knowledge (boycott Elsevier), and sign, if you agree.
It will take some serious courage, esepcially for junior scientists, since Elsevier owns Cell, Current Biology, and many others.
For background information, read the blogposts by Tom Gowers, Terence Tao, HMS; articles in the Guardian, NYT, the Boston Globe.
If you want to have a good laugh, investment firms seem to know a lot about Open Access Movement -- read this.(April 22, 2012)
Suckjoon will be giving a keynote speech at the Chemical Biophysics Symposium in Toronto, Canada.(April 13-15, 2012)
Sattar has been accepted to Advanced Bacterial Genetics course at Cold Spring Harbor Laboratory.
Intense 3 weeks in June!(April 2, 2012)
Petra Levin (Washington Univ., St Louis) visited us to discuss bacterial cell cycle in E. coli and B. subtilis.(January 6-7, 2012)
The complete data sets for the mother machine paper are available for download.
Please see here or here before writing us with requests. Thanks.(November 28, 2011)
Muyoung Heo has been selected as one of the 15 Fellows in natural sciences awarded by the President of Korea.
It is a great deal and it comes with a very generous package for his future research.(August 30, 2011)

Current Lab Members

  • Omid Azizi (UC Regents Scholar, undergrad)
  • Steven Brown (molecular biology, postdoc)
  • Sarah Cox (lab manager, research assistant)
  • Mike Erickstad (physics, postdoc)
  • Lauren Fong (human biology, undergrad)
  • Suckjoon Jun (PI)
  • Yonggun Jun (physics, scientist)
  • Dongyang Li (biology, grad student)
  • Xintian Li (molecular biology, scientist)
  • JT Sauls (systems biology, grad student)
  • Amy Schwartz (physics, undergrad)
  • Fangwei Si (applied physics, postdoc)
  • Cindy Sou (biochem & cell biology, undergrad)
  • Jia-Wei Yeh (physics, postdoc)

Join Us

See JOIN page.